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Species belonging to selected taxon:

Theobroma cacao



ABOUT THIS RECORD

ID: MNEST041126
species: Theobroma cacao
miRNA family: MIR172
source: miRBase, original name: tcc-MIR172c (MI0017499)

Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGAATCTTGATGATGCTGCAT

miRNA*
GCGGCATCATCAAGATTCACA

mismatches: 1
bulges: 0

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pre-miRNA
CAATCTGTCAGTGTTTGCAGATGCGGCATCATCAAGATTCACAAACTTTAGTAAGGGCTTCTTTTGGAGGCCGGGGAGTGGTAACCAATCACCTCCTTTA
CTCGAAAGTTACCTTTCAAATGGGAATCTTGATGATGCTGCATCAGCAAACATATTGGCTATT


dot-bracket secondary structure
......((((((((((((.(((((((((((((((((((((.((......(((((.((((((.....)))))).((..(((((.....)))))..)).)))
)).(((((....)))))...)).))))))))))))))))))))).))))))))..))))....



SIMILARITIES
miRBase aly-MIR172e: 0.0000000001

PMRD ptc-miRf11917-akr: 0.0000000005

microPC miR172: 0.00003
UniProt no hits

RFAM mir-172: 0.0000000000002

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"




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